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Package 215/479HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.31.1
Seth Falcon
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 54945 / Revision: 56603
Last Changed Date: 2011-04-19 13:42:15 -0700 (Tue, 19 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.31.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings graph_1.31.1.tar.gz
StartedAt: 2011-07-07 00:55:55 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 00:57:05 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 70.1 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graph/DESCRIPTION’ ... OK
* this is package ‘graph’ version ‘1.31.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘graph’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘graph_unit_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* installing *source* package ‘graph’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c graph.c -o graph.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o graph.so graph.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
mv graph.so BioC_graph.so
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck/graph/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘GraphClass.Rnw’ 
   ‘MultiGraphClass.Rnw’ 
   ‘clusterGraph.Rnw’ 
   ‘graph.Rnw’ 
   ‘graphAttributes.Rnw’ 
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0520.0000.051
IMCA0.2960.0120.312
MAPKsig0.1560.0200.175
MultiGraph-class0.1160.0080.120
acc-methods0.0200.0000.021
addEdge0.0160.0000.014
addNode0.0160.0000.015
adj-methods0.0040.0000.007
apoptosisGraph0.0280.0040.032
attrData-class0.0040.0000.001
aveNumEdges0.0120.0000.013
biocRepos0.0040.0000.002
boundary0.0120.0000.011
buildRepDepGraph000
calcProb000
calcSumProb0.0080.0000.009
clearNode0.0120.0000.009
clusterGraph-class0.0040.0040.007
clusteringCoefficient-methods0.0080.0040.011
combineNodes0.060.000.06
distGraph-class0.0040.0000.002
duplicatedEdges000
edgeMatrix0.0160.0000.018
edgeSets0.0280.0040.033
edgeWeights0.0120.0000.013
fromGXL-methods0.5040.0040.513
graph-class0.0120.0000.010
graph2SparseM0.2760.0040.279
graphAM-class0.0280.0000.026
graphBAM-class0.1480.0000.149
graphExamples0.0080.0040.009
graphNEL-class0.0040.0000.006
inEdges0.0040.0000.006
leaves0.0200.0000.017
listEdges0.0120.0000.013
matrix2Graph0.0320.0000.032
mostEdges0.0200.0040.027
numNoEdges0.0040.0000.005
pancrCaIni0.0880.0040.093
randomEGraph0.0160.0000.016
randomGraph0.0080.0000.009
randomNodeGraph0.0040.0000.007
removeEdge0.0080.0040.013
removeNode0.0080.0000.009
renderInfo-class0.0120.0000.013
reverseEdgeDirections0.0080.0000.008
simpleEdge-class0.0040.0000.002
standardLabeling0.0680.0000.068
subGraph0.0000.0040.002
toDotR-methods0.0400.0040.042
ugraph0.0160.0000.017
validGraph0.0040.0000.002