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Package 215/479HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.31.1
Seth Falcon
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 54945 / Revision: 56603
Last Changed Date: 2011-04-19 13:42:15 -0700 (Tue, 19 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: graph
Version: 1.31.1
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch graph_1.31.1.tar.gz
StartedAt: 2011-07-07 03:40:22 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 03:42:02 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 100.0 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-22 r56208)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.31.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                  old_size new_size compress
  esetsFemale.rda    121Kb     58Kb       xz
  esetsMale.rda      119Kb     56Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* installing *source* package 'graph' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.9-bioc/meat/graph.Rcheck/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GraphClass.Rnw' 
   'MultiGraphClass.Rnw' 
   'clusterGraph.Rnw' 
   'graph.Rnw' 
   'graphAttributes.Rnw' 
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0670.0010.067
IMCA0.4340.0140.454
MAPKsig0.2400.0120.290
MultiGraph-class0.1630.0050.169
acc-methods0.0270.0010.028
addEdge0.0190.0000.020
addNode0.0200.0000.021
adj-methods0.0090.0010.009
apoptosisGraph0.0750.0030.079
attrData-class0.0040.0000.005
aveNumEdges0.0190.0000.020
biocRepos0.0040.0010.004
boundary0.0150.0010.016
buildRepDepGraph000
calcProb0.0000.0000.001
calcSumProb0.0130.0010.014
clearNode0.0130.0010.014
clusterGraph-class0.0070.0000.007
clusteringCoefficient-methods0.0180.0000.018
combineNodes0.0750.0010.076
distGraph-class0.0010.0010.002
duplicatedEdges0.0010.0000.000
edgeMatrix0.0280.0010.029
edgeSets0.0590.0030.062
edgeWeights0.0170.0010.018
fromGXL-methods0.7240.0160.765
graph-class0.0130.0010.015
graph2SparseM0.3400.0110.352
graphAM-class0.0270.0000.028
graphBAM-class0.1440.0020.151
graphExamples0.0110.0010.011
graphNEL-class0.0100.0010.011
inEdges0.0050.0000.006
leaves0.0240.0020.027
listEdges0.0190.0020.020
matrix2Graph0.0450.0020.047
mostEdges0.0380.0020.040
numNoEdges0.0080.0000.008
pancrCaIni0.1650.0030.169
randomEGraph0.0150.0000.016
randomGraph0.0140.0010.014
randomNodeGraph0.0090.0000.009
removeEdge0.0180.0010.019
removeNode0.0070.0000.007
renderInfo-class0.0210.0000.024
reverseEdgeDirections0.0100.0000.011
simpleEdge-class0.0010.0000.002
standardLabeling0.0820.0080.091
subGraph0.0020.0010.003
toDotR-methods0.0500.0060.057
ugraph0.0170.0010.021
validGraph0.0080.0000.008