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Package 442/467HostnameOS / ArchBUILDCHECKBUILD BIN
survcomp 1.2.1
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/survcomp
Last Changed Rev: 56594 / Revision: 59457
Last Changed Date: 2011-07-06 11:53:44 -0700 (Wed, 06 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: survcomp
Version: 1.2.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch survcomp_1.2.1.tar.gz
StartedAt: 2011-10-20 17:41:58 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:42:53 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 56.0 seconds
RetCode: 0
Status:  OK 
CheckDir: survcomp.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/survcomp.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'survcomp/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'survcomp' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'survcomp' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'survcomp.pdf' from 404Kb to 232Kb
  consider running tools::compactPDF() on these files
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: xtable
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

survcomp.Rcheck/00install.out:

* installing *source* package 'survcomp' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c concordance.index.c -o concordance.index.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o survcomp.so concordance.index.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/survcomp.Rcheck/survcomp/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (survcomp)

survcomp.Rcheck/survcomp-Ex.timings:

nameusersystemelapsed
D.index0.0270.0050.054
breastCancerData1.3220.0271.356
censor.time0.0010.0010.001
cindex.comp0.0060.0000.007
cindex.comp.meta0.0090.0010.010
combine.est0.0010.0000.002
combine.test0.0010.0000.001
concordance.index0.0130.0030.016
cvpl0.4230.0060.438
dindex.comp0.0230.0000.024
dindex.comp.meta0.0490.0010.053
fisherz0.0000.0000.001
forestplot.surv000
getsurv20.010.000.01
hazard.ratio0.0150.0020.018
hr.comp0.0250.0010.026
hr.comp.meta0.0460.0000.047
hr.comp20.0150.0000.015
iauc.comp0.8930.0060.903
ibsc.comp0.5090.0020.515
km.coxph.plot0.0660.0020.068
logpl0.0390.0010.039
mainz7g0.2820.0110.294
nki7g0.2660.0090.279
no.at.risk0.0580.0010.060
sbrier.score2proba0.4990.0040.511
score2proba0.0460.0010.047
td.sens.spec0.0020.0010.081
tdrocc0.4310.0040.436
test.hetero.est0.0010.0000.001
test.hetero.test0.0010.0000.001
transbig7g0.2770.0080.286
unt7g0.2730.0080.285
upp7g0.2790.0080.288
vdx7g0.2720.0080.283