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Package 442/467HostnameOS / ArchBUILDCHECKBUILD BIN
survcomp 1.2.1
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/survcomp
Last Changed Rev: 56594 / Revision: 59457
Last Changed Date: 2011-07-06 11:53:44 -0700 (Wed, 06 Jul 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: survcomp
Version: 1.2.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings survcomp_1.2.1.tar.gz
StartedAt: 2011-10-20 14:44:19 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:44:54 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 34.8 seconds
RetCode: 0
Status:  OK 
CheckDir: survcomp.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/survcomp.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘survcomp/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘survcomp’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘survcomp’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: xtable
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

survcomp.Rcheck/00install.out:

* installing *source* package ‘survcomp’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c concordance.index.c -o concordance.index.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o survcomp.so concordance.index.o -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/survcomp.Rcheck/survcomp/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (survcomp)

survcomp.Rcheck/survcomp-Ex.timings:

nameusersystemelapsed
D.index0.0160.0040.021
breastCancerData1.0120.0241.040
censor.time000
cindex.comp0.0040.0000.004
cindex.comp.meta0.0040.0000.007
combine.est0.0040.0000.001
combine.test0.0000.0000.001
concordance.index0.0160.0000.017
cvpl0.3560.0040.361
dindex.comp0.0160.0000.017
dindex.comp.meta0.0360.0000.037
fisherz0.0000.0000.001
forestplot.surv000
getsurv20.0080.0000.007
hazard.ratio0.0080.0040.013
hr.comp0.0240.0000.022
hr.comp.meta0.0400.0000.038
hr.comp20.0120.0040.016
iauc.comp0.6840.0040.688
ibsc.comp0.4600.0000.457
km.coxph.plot0.0520.0000.054
logpl0.0280.0040.032
mainz7g0.1560.0080.163
nki7g0.1720.0040.173
no.at.risk0.0600.0040.061
sbrier.score2proba0.3880.0000.386
score2proba0.0280.0000.029
td.sens.spec0.0040.0000.002
tdrocc0.3320.0000.335
test.hetero.est0.0000.0000.001
test.hetero.test000
transbig7g0.1680.0040.170
unt7g0.1720.0040.174
upp7g0.1640.0040.175
vdx7g0.1680.0000.168