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Package 243/436HostnameOS / ArchBUILDCHECKBUILD BIN
maDB 1.23.0
Johannes Rainer
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/maDB
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  ERROR  ERROR 

Summary

Package: maDB
Version: 1.23.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings maDB_1.23.0.tar.gz
StartedAt: 2011-02-24 20:51:03 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:51:48 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 44.6 seconds
RetCode: 0
Status:  OK 
CheckDir: maDB.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/maDB.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maDB/DESCRIPTION’ ... OK
* this is package ‘maDB’ version ‘1.23.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maDB’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.calcRegulations: no visible global function definition for
  ‘rpgsql.format.values’
.calculateDBRegulations.old: no visible global function definition for
  ‘rpgsql.format.values’
.dbUpdateAnnotation.old: no visible global function definition for
  ‘rpgsql.format.values’
.deleteTheExperiment: no visible global function definition for
  ‘rpgsql.format.values’
.processColumnNames: possible error in strsplit(column.names, split =
  ".", extended = FALSE, fixed = TRUE): unused argument(s) (extended =
  FALSE)
.publishExperimentToDB: no visible global function definition for
  ‘rpgsql.format.values’
checkForDifferentAnnotation: no visible global function definition for
  ‘rpgsql.format.values’
dbGetAnnotation: no visible global function definition for
  ‘rpgsql.format.values’
dbGetExperimentInfo: no visible global function definition for
  ‘rpgsql.format.values’
dbGetGeneRegulationRanking: no visible global function definition for
  ‘rpgsql.format.values’
dbSearchSimilarPattern: no visible global function definition for
  ‘rpgsql.format.values’
dbUpdateAnnotation: no visible global function definition for
  ‘rpgsql.format.values’
getEDB: no visible global function definition for
  ‘rpgsql.format.values’
getMDB: no visible global function definition for
  ‘rpgsql.format.values’
getPK,Sample: no visible global function definition for
  ‘rpgsql.format.values’
loadFromDB,MadbSet: no visible global function definition for
  ‘rpgsql.format.values’
loadFromDB,Sample: no visible global function definition for
  ‘rpgsql.format.values’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

maDB.Rcheck/00install.out:

* installing *source* package ‘maDB’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Rdbi
Creating a new generic function for "sort" in "maDB"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maDB)

maDB.Rcheck/maDB-Ex.timings:

nameusersystemelapsed
arrowProgress000
calculateSimilarity0.0040.0000.001
createJOINQuery000
getPathFromFile000
isDecimal000
mapply0.0120.0000.014
mean.center0.0040.0000.000
meanWithoutNA0.0000.0000.001
medianWithoutNA0.0000.0000.001
multiGrep0.0000.0000.001
progress000
replaceAll0.0000.0000.001
replaces0.0000.0000.001