To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maDB")

In most cases, you don't need to download the package archive at all.

maDB

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see maDB.

Microarray database and utility functions for microarray data analysis.

Bioconductor version: 2.8

maDB allows to create a simple microarray database to store microarray experiments and annotation data into it. Affymetrix GeneChip expression values as well as values from two color microarrays can be stored into the database. Whole experiments or subsets from a experiment (or also values for a subset of genes in a subset of microarrays) can be fetched back to R. Additionally maDB provides different utility functions for the microarray data analysis like functions to draw MA plots or volcano plots with the data points color coded according to the local point density or functions that allow a replicate handling of miroarrays.

Author: Johannes Rainer <johannes.rainer at i-med.ac.at>

Maintainer: Johannes Rainer <johannes.rainer at i-med.ac.at>

Citation (from within R, enter citation("maDB")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("maDB")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("maDB")

 

PDF maDB-015.pdf
PDF maDB-016.pdf
PDF maDB.pdf
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Software, TwoChannel, Visualization
Version 1.24.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License LGPL (>= 2)
Depends R (>= 2.6.0), Biobase(>= 2.5.5), affy(>= 1.23.4), pgUtils(>= 1.23.2), limma(>= 1.8.0), methods
Imports
LinkingTo
Suggests annaffy(>= 1.6.2), biomaRt(>= 1.8.2), geneplotter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source maDB_1.24.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/maDB/tree/release-2.8
Package Short Url http://bioconductor.org/packages/maDB/
Package Downloads Report Download Stats

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