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Package 258/389HostnameOS / ArchBUILDCHECKBUILD BIN
OCplus 1.22.0
Alexander Ploner
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/OCplus
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: OCplus
Version: 1.22.0
Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings OCplus_1.22.0.tar.gz
StartedAt: 2010-10-04 19:17:11 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 19:18:30 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 78.3 seconds
RetCode: 0
Status:  OK  
CheckDir: OCplus.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/OCplus.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.22.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: tstatistics.Rd:38-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
  plot.FDR.result

S3 methods shown with full name in documentation object 'plot.fdr1d.result':
  plot.fdr1d.result

S3 methods shown with full name in documentation object 'plot.fdr2d.result':
  plot.fdr2d.result

S3 methods shown with full name in documentation object 'summary.fdr.result':
  summary.fdr.result

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd contents ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

OCplus.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package 'OCplus' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (OCplus)

OCplus.Rcheck/OCplus-Ex.timings:

nameusersystemelapsed
EOC1.280.021.30
FDR000
MAsim.smyth0.410.000.40
OCshow2.510.032.57
TOC0.710.000.70
average.fdr2.010.012.34
fdr1d0.880.000.88
fdr2d1.150.021.17
plot.FDR.result0.240.000.23
plot.fdr1d.result0.870.061.03
plot.fdr2d.result1.320.021.44
samplesize9.170.099.27
smooth1d0.140.000.14
summary.fdr.result0.840.020.94
tMixture7.050.077.13