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Package 258/389HostnameOS / ArchBUILDCHECKBUILD BIN
OCplus 1.22.0
Alexander Ploner
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/OCplus
Last Changed Rev: 46401 / Revision: 49923
Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: OCplus
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings OCplus_1.22.0.tar.gz
StartedAt: 2010-10-04 17:59:29 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 18:01:00 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 91.2 seconds
RetCode: 0
Status:  OK 
CheckDir: OCplus.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/OCplus.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'OCplus/DESCRIPTION' ... OK
* this is package 'OCplus' version '1.22.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'OCplus' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: tstatistics.Rd:38-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.FDR.result':
  plot.FDR.result

S3 methods shown with full name in documentation object 'plot.fdr1d.result':
  plot.fdr1d.result

S3 methods shown with full name in documentation object 'plot.fdr2d.result':
  plot.fdr2d.result

S3 methods shown with full name in documentation object 'summary.fdr.result':
  summary.fdr.result

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd contents ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

OCplus.Rcheck/00install.out:

* install options are ' --no-html'

* installing *source* package ‘OCplus’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (OCplus)

OCplus.Rcheck/OCplus-Ex.timings:

nameusersystemelapsed
EOC1.4340.4631.915
FDR0.0040.0010.003
MAsim.smyth0.5380.1690.715
OCshow2.9740.8053.816
TOC0.9460.0281.072
average.fdr2.7430.7923.605
fdr1d1.0820.4071.512
fdr2d1.4540.3791.852
plot.FDR.result0.3100.1370.450
plot.fdr1d.result1.1070.4001.534
plot.fdr2d.result1.4790.3881.880
samplesize13.891 0.20614.156
smooth1d0.2190.0090.228
summary.fdr.result1.2090.4051.640
tMixture10.773 0.25411.283