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Package 301/319HostnameOS / ArchBUILDCHECKBUILD BIN
TargetSearch 1.0.0
Alvaro Cuadros-Inostroza
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/TargetSearch
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: TargetSearch
Version: 1.0.0
Command: E:\biocbld\bbs-2.4-bioc\R\bin\R.exe CMD check --no-vignettes TargetSearch_1.0.0.tar.gz
StartedAt: 2009-10-20 18:34:12 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 18:35:35 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 82.6 seconds
RetCode: 0
Status: OK
CheckDir: TargetSearch.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.4-bioc/meat/TargetSearch.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TargetSearch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TargetSearch' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TargetSearch' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

TargetSearch.Rcheck/00install.out:

* Installing *source* package 'TargetSearch' ...
** libs
  making DLL ...
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c Rinit.c -o Rinit.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c find_peaks.c -o find_peaks.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c getLine.c -o getLine.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c netcdf_peak_finding.c -o netcdf_peak_finding.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c peakExtraction.c -o peakExtraction.o
gcc -I"e:/biocbld/bbs-2.4-bioc/R/include"        -O3 -Wall  -std=gnu99 -c ppc.c -o ppc.o
gcc -shared -s -o TargetSearch.dll tmp.def Rinit.o find_peaks.o getLine.o netcdf_peak_finding.o peakExtraction.o ppc.o -Le:/biocbld/bbs-2.4-bioc/R/bin -lR
  ... done
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'TargetSearch'
     Formats: text html latex example chm 
  FAMEoutliers                      text    html    latex   example chm
  FindPeaks                         text    html    latex   example chm
  ImportFameSettings                text    html    latex   example chm
  ImportLibrary                     text    html    latex   example chm
  ImportSamples                     text    html    latex   example chm
  NetCDFPeakFinding                 text    html    latex   example chm
  Profile                           text    html    latex   example chm
  ProfileCleanUp                    text    html    latex   example chm
  RIcorrect                         text    html    latex   example chm
  TargetSearch-package              text    html    latex           chm
  Write.Results                     text    html    latex           chm
  medianRILib                       text    html    latex   example chm
  peakCDFextraction                 text    html    latex           chm
  peakFind                          text    html    latex   example chm
  plotFAME                          text    html    latex   example chm
  plotPeak                          text    html    latex   example chm
  plotRIdev                         text    html    latex   example chm
  plotSpectra                       text    html    latex   example chm
  ri2rt                             text    html    latex   example chm
  rt2ri                             text    html    latex   example chm
  sampleRI                          text    html    latex   example chm
  tsLib-class                       text    html    latex   example chm
  tsMSdata-class                    text    html    latex   example chm
  tsProfile-class                   text    html    latex   example chm
  tsRim-class                       text    html    latex   example chm
  tsSample-class                    text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\BBS-2~1.4-B\meat\TARGET~1.RCH\00_PKG~1\TARGET~1\chm\TargetSearch.chm


Compile time: 0 minutes, 0 seconds
27	Topics
243	Local links
0	Internet links
1	Graphic


Created e:\biocbld\BBS-2~1.4-B\meat\TARGET~1.RCH\00_PKG~1\TARGET~1\chm\TargetSearch.chm, 50,321 bytes
Compression decreased file by 81,709 bytes.
** building package indices ...
** MD5 sums
* DONE (TargetSearch)