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Package 129/319HostnameOS / ArchBUILDCHECKBUILD BIN
GLAD 2.0.0
Philippe Hupe
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GLAD
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
Package: GLAD
Version: 2.0.0
Command: /home/biocbuild/bbs-2.4-bioc/R/bin/R CMD build GLAD
StartedAt: 2009-10-20 13:39:14 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 13:39:28 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 14.5 seconds
RetCode: 0
Status: OK
PackageFile: GLAD_2.0.0.tar.gz
PackageFileSize: 1.341 MiB

Command output

* checking for file 'GLAD/DESCRIPTION' ... OK
* preparing 'GLAD':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GLAD' ...

Configuring variable environment

OS is: Linux
variable environment completed

** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c HaarSeg.c -o HaarSeg.o
HaarSeg.c: In function 'HaarConv':
HaarSeg.c:47: warning: unused variable 'totalNorm'
HaarSeg.c:134:8: warning: "/*" within comment
HaarSeg.c:158:8: warning: "/*" within comment
HaarSeg.c: In function 'FindLocalPeaks':
HaarSeg.c:110: warning: unused variable 'j'
HaarSeg.c: In function 'HaarConv':
HaarSeg.c:46: warning: 'highNonNormed' may be used uninitialized in this function
HaarSeg.c:45: warning: 'lowNonNormed' may be used uninitialized in this function
HaarSeg.c:42: warning: 'highWeightSum' may be used uninitialized in this function
HaarSeg.c:41: warning: 'lowWeightSum' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c distance.c -o distance.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c glad-function.c -o glad-function.o
g++ -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c glad.cpp -o glad.o
glad.cpp: In function 'void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)':
glad.cpp:112: warning: comparison between signed and unsigned integer expressions
glad.cpp:139: warning: suggest parentheses around comparison in operand of &
glad.cpp:144: warning: suggest parentheses around comparison in operand of &
glad.cpp: In function 'void loopRemove(double*, int*, int*, int*, int*, int*, int*, double*, double*, double*, double*, int*)':
glad.cpp:189: warning: 'LabelRegionRemovedNext' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c hclust.c -o hclust.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.4-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c laws.c -o laws.o
g++ -shared -L/usr/local/lib64 -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -L/home/biocbuild/bbs-2.4-bioc/R/lib -lR
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GLAD'
     Formats: text html latex example 
  ChrNumeric                        text    html    latex   example
  ColorBar                          text    html    latex   example
  GLAD-internal                     text    html    latex
  arrayCGH                          text    html    latex   example
  arrayPersp                        text    html    latex   example
  arrayPlot                         text    html    latex   example
  as.data.frame.profileCGH          text    html    latex   example
  as.profileCGH                     text    html    latex   example
  bladder                           text    html    latex   example
  cytoband                          text    html    latex   example
  daglad                            text    html    latex   example
  glad                              text    html    latex   example
  hclust                            text    html    latex   example
  kernel                            text    html    latex
  myPalette                         text    html    latex   example
  plotProfile                       text    html    latex   example
  profileCGH                        text    html    latex   example
  snijders                          text    html    latex   example
  tkdaglad                          text    html    latex   example
  veltman                           text    html    latex   example
** building package indices ...
* DONE (GLAD)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GLAD_2.0.0.tar.gz'