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Package 129/319HostnameOS / ArchBUILDCHECKBUILD BIN
GLAD 2.0.0
Philippe Hupe
Bioconductor Changelog
Snapshot Date: 2009-10-20 11:27:33 -0700 (Tue, 20 Oct 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_4/madman/Rpacks/GLAD
Last Changed Rev: 39013 / Revision: 42512
Last Changed Date: 2009-04-20 16:24:12 -0700 (Mon, 20 Apr 2009)
wilson1 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
Package: GLAD
Version: 2.0.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh GLAD_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/2.9/Resources/bin/R GLAD.buildbin-libdir
StartedAt: 2009-10-20 19:23:55 -0700 (Tue, 20 Oct 2009)
EndedAt: 2009-10-20 19:24:23 -0700 (Tue, 20 Oct 2009)
EllapsedTime: 28.3 seconds
RetCode: 0
Status: OK
PackageFile: GLAD_2.0.0.tgz
PackageFileSize: 1.478 MiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --preclean --library=GLAD.buildbin-libdir GLAD_2.0.0.tar.gz'

* Installing *source* package ‘GLAD’ ...

Configuring variable environment

OS is: Darwin
src/Makevars has been created
PKG_CFLAGS+=-DIS_MAC_OS
PKG_CXXFLAGS+=-DIS_MAC_OS
variable environment completed

** libs
** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c HaarSeg.c -o HaarSeg.o
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:47: warning: unused variable ‘totalNorm’
HaarSeg.c:134:8: warning: "/*" within comment
HaarSeg.c:158:8: warning: "/*" within comment
HaarSeg.c: In function ‘FindLocalPeaks’:
HaarSeg.c:110: warning: unused variable ‘j’
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:46: warning: ‘highNonNormed’ may be used uninitialized in this function
HaarSeg.c:45: warning: ‘lowNonNormed’ may be used uninitialized in this function
HaarSeg.c:42: warning: ‘highWeightSum’ may be used uninitialized in this function
HaarSeg.c:41: warning: ‘lowWeightSum’ may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c distance.c -o distance.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c glad-function.c -o glad-function.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -fasm-blocks -c glad.cpp -o glad.o
glad.cpp: In function ‘void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)’:
glad.cpp:112: warning: comparison between signed and unsigned integer expressions
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c hclust.c -o hclust.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/i386  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c laws.c -o laws.o
g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
 >>> Building/Updating help pages for package 'GLAD'
     Formats: text html latex example 
  ChrNumeric                        text    html    latex   example
  ColorBar                          text    html    latex   example
  GLAD-internal                     text    html    latex
  arrayCGH                          text    html    latex   example
  arrayPersp                        text    html    latex   example
  arrayPlot                         text    html    latex   example
  as.data.frame.profileCGH          text    html    latex   example
  as.profileCGH                     text    html    latex   example
  bladder                           text    html    latex   example
  cytoband                          text    html    latex   example
  daglad                            text    html    latex   example
  glad                              text    html    latex   example
  hclust                            text    html    latex   example
  kernel                            text    html    latex
  myPalette                         text    html    latex   example
  plotProfile                       text    html    latex   example
  profileCGH                        text    html    latex   example
  snijders                          text    html    latex   example
  tkdaglad                          text    html    latex   example
  veltman                           text    html    latex   example
** building package indices ...
* DONE (GLAD)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=GLAD.buildbin-libdir --libs-only GLAD_2.0.0.tar.gz'

* Installing *source* package ‘GLAD’ ...

Configuring variable environment

OS is: Darwin
src/Makevars has been created
PKG_CFLAGS+=-DIS_MAC_OS
PKG_CXXFLAGS+=-DIS_MAC_OS
variable environment completed

** libs
** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c HaarSeg.c -o HaarSeg.o
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:47: warning: unused variable ‘totalNorm’
HaarSeg.c:134:8: warning: "/*" within comment
HaarSeg.c:158:8: warning: "/*" within comment
HaarSeg.c: In function ‘FindLocalPeaks’:
HaarSeg.c:110: warning: unused variable ‘j’
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:46: warning: ‘highNonNormed’ may be used uninitialized in this function
HaarSeg.c:45: warning: ‘lowNonNormed’ may be used uninitialized in this function
HaarSeg.c:42: warning: ‘highWeightSum’ may be used uninitialized in this function
HaarSeg.c:41: warning: ‘lowWeightSum’ may be used uninitialized in this function
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c distance.c -o distance.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c glad-function.c -o glad-function.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -fasm-blocks -c glad.cpp -o glad.o
glad.cpp: In function ‘void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)’:
glad.cpp:112: warning: comparison between signed and unsigned integer expressions
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c hclust.c -o hclust.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/ppc  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c laws.c -o laws.o
g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (GLAD)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=GLAD.buildbin-libdir --libs-only GLAD_2.0.0.tar.gz'

* Installing *source* package ‘GLAD’ ...

Configuring variable environment

OS is: Darwin
src/Makevars has been created
PKG_CFLAGS+=-DIS_MAC_OS
PKG_CXXFLAGS+=-DIS_MAC_OS
variable environment completed

** libs
** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c HaarSeg.c -o HaarSeg.o
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:47: warning: unused variable ‘totalNorm’
HaarSeg.c:134:8: warning: "/*" within comment
HaarSeg.c:158:8: warning: "/*" within comment
HaarSeg.c: In function ‘FindLocalPeaks’:
HaarSeg.c:110: warning: unused variable ‘j’
HaarSeg.c: In function ‘HaarConv’:
HaarSeg.c:46: warning: ‘highNonNormed’ may be used uninitialized in this function
HaarSeg.c:45: warning: ‘lowNonNormed’ may be used uninitialized in this function
HaarSeg.c:42: warning: ‘highWeightSum’ may be used uninitialized in this function
HaarSeg.c:41: warning: ‘lowWeightSum’ may be used uninitialized in this function
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c distance.c -o distance.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c glad-function.c -o glad-function.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -fasm-blocks -c glad.cpp -o glad.o
glad.cpp: In function ‘void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)’:
glad.cpp:112: warning: comparison between signed and unsigned integer expressions
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c hclust.c -o hclust.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include -I/Library/Frameworks/R.framework/Versions/2.9/Resources/include/x86_64  -I/usr/local/include   -DIS_MAC_OS -fPIC  -g -O2 -Wall -c laws.c -o laws.o
g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GLAD.so HaarSeg.o distance.o glad-function.o glad.o hclust.o laws.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
* DONE (GLAD)