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Package 31/64HostnameOS / ArchBUILDCHECKBUILD BIN
harbChIP 0.0.8
VJ Carey
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/harbChIP
Last Changed Rev: 734 / Revision: 760
Last Changed Date: 2008-10-27 11:05:21 -0700 (Mon, 27 Oct 2008)
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: harbChIP
Version: 0.0.8
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD check --no-vignettes harbChIP_0.0.8.tar.gz
StartedAt: 2009-04-10 02:24:48 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 02:27:05 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 137.0 seconds
RetCode: 0
Status: OK
CheckDir: harbChIP.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-data-experiment/meat/harbChIP.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'harbChIP/DESCRIPTION' ... OK
* this is package 'harbChIP' version '0.0.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'harbChIP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chkAllUS: no visible binding for global variable 'sceUpstr'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating harbChIP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating harbChIP-manual.tex ... OK
* checking harbChIP-manual.tex using pdflatex ... OK

harbChIP.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.3-data-experiment/meat/harbChIP.Rcheck


---------- Making package harbChIP ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package harbChIP for lazy loading
Loading required package: tools
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Biostrings
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:Biobase :

	 annotation 


	The following object(s) are masked from package:base :

	 cbind,
	 rbind,
	 sapply 


Attaching package: 'Biostrings'


	The following object(s) are masked from package:base :

	 chartr,
	 order,
	 substr,
	 substring 

  installing man source files
  installing indices
Loading required package: methods
Loading required package: utils
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'harbChIP'
     Formats: text html latex example chm 
  allhex                            text    html    latex   example chm
  buildUpstreamSeqs2                text    html    latex   example chm
  chkMotif4TF                       text    html    latex   example chm
  harbChIP                          text    html    latex   example chm
Note: removing empty section \references in file 'sceUpstream.Rd'
Note: removing empty section \references in file 'sceUpstream.Rd'
  sceUpstream                       text    html    latex   example chm
  upstreamSeqs-class                text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.3-data-experiment\meat\harbChIP.Rcheck\00_pkg_src\harbChIP\chm\harbChIP.chm


Compile time: 0 minutes, 0 seconds
7	Topics
24	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.3-data-experiment\meat\harbChIP.Rcheck\00_pkg_src\harbChIP\chm\harbChIP.chm, 20,909 bytes
Compression decreased file by 1,480 bytes.
  adding MD5 sums

* DONE (harbChIP)