harbChIP 0.0.8
VJ Carey
| Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/harbChIP | | Last Changed Rev: 734 / Revision: 760 | | Last Changed Date: 2008-10-27 11:05:21 -0700 (Mon, 27 Oct 2008) |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | [ OK ] | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-data-experiment/meat/harbChIP.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'harbChIP/DESCRIPTION' ... OK
* this is package 'harbChIP' version '0.0.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'harbChIP' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
chkAllUS: no visible binding for global variable 'sceUpstr'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating harbChIP-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating harbChIP-manual.tex ... OK
* checking harbChIP-manual.tex using pdflatex ... OK
* Installing *source* package 'harbChIP' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: tools
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Biostrings
Loading required package: IRanges
Attaching package: 'IRanges'
The following object(s) are masked from package:Biobase :
annotation
The following object(s) are masked from package:base :
cbind,
rbind,
sapply
Attaching package: 'Biostrings'
The following object(s) are masked from package:base :
chartr,
order,
substr,
substring
** help
>>> Building/Updating help pages for package 'harbChIP'
Formats: text html latex example
allhex text html latex example
buildUpstreamSeqs2 text html latex example
chkMotif4TF text html latex example
harbChIP text html latex example
Note: removing empty section \references in file 'sceUpstream.Rd'
sceUpstream text html latex example
upstreamSeqs-class text html latex example
** building package indices ...
Loading required package: methods
Loading required package: utils
* DONE (harbChIP)