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Package 124/294HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAlignment 1.4.0
Joern P. Meier
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GraphAlignment
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GraphAlignment
Version: 1.4.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh GraphAlignment_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R GraphAlignment.buildbin-libdir
StartedAt: 2009-04-18 18:29:23 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 18:29:32 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 8.9 seconds
RetCode: 0
Status: OK
PackageFile: GraphAlignment_1.4.0.tgz
PackageFileSize: 361.4 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL --library=GraphAlignment.buildbin-libdir GraphAlignment_1.4.0.tar.gz'

* Installing *source* package 'GraphAlignment' ...
** libs
** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_alloc.c -o GA_alloc.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_matrix.c -o GA_matrix.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_matrix_R.c -o GA_matrix_R.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_message.c -o GA_message.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_vector.c -o GA_vector.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GA_vector_R.c -o GA_vector_R.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c GraphAlignment.c -o GraphAlignment.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -c lap.c -o lap.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GraphAlignment.so GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_alloc.c -o GA_alloc.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_matrix.c -o GA_matrix.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_matrix_R.c -o GA_matrix_R.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_message.c -o GA_message.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_vector.c -o GA_vector.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GA_vector_R.c -o GA_vector_R.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c GraphAlignment.c -o GraphAlignment.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include -I/Library/Frameworks/R.framework/Versions/2.8/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -c lap.c -o lap.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GraphAlignment.so GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'GraphAlignment'
     Formats: text html latex example 
  AlignNetworks                     text    html    latex   example
  AlignedPairs                      text    html    latex   example
  AnalyzeAlignment                  text    html    latex   example
  ComputeLinkParameters             text    html    latex   example
  ComputeM                          text    html    latex   example
  ComputeNodeParameters             text    html    latex   example
  ComputeScores                     text    html    latex   example
  CreateScoreMatrix                 text    html    latex   example
  EncodeDirectedGraph               text    html    latex   example
  GenerateExample                   text    html    latex   example
  GetBinNumber                      text    html    latex   example
  InitialAlignment                  text    html    latex   example
  InvertPermutation                 text    html    latex   example
  LinearAssignment                  text    html    latex   example
  MatrixToBin                       text    html    latex   example
  Permute                           text    html    latex   example
  Trace                             text    html    latex   example
  VectorToBin                       text    html    latex   example
** building package indices ...
* DONE (GraphAlignment)