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Package 124/294HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAlignment 1.4.0
Joern P. Meier
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/GraphAlignment
Last Changed Rev: 34811 / Revision: 38965
Last Changed Date: 2008-10-21 15:32:58 -0700 (Tue, 21 Oct 2008)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ OK ] OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK  OK  OK 
Package: GraphAlignment
Version: 1.4.0
Command: E:\biocbld\bbs-2.3-bioc\R\bin\R.exe CMD build GraphAlignment
StartedAt: 2009-04-18 17:28:18 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:28:41 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 22.9 seconds
RetCode: 0
Status: OK
PackageFile: GraphAlignment_1.4.0.tar.gz
PackageFileSize: 322.5 KiB

Command output

* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* preparing 'GraphAlignment':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.3-bioc/tmpdir/Rinst311639254


---------- Making package GraphAlignment ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making GA_alloc.d from GA_alloc.c
making GA_matrix.d from GA_matrix.c
making GA_matrix_R.d from GA_matrix_R.c
making GA_message.d from GA_message.c
making GA_vector.d from GA_vector.c
making GA_vector_R.d from GA_vector_R.c
making GraphAlignment.d from GraphAlignment.c
making lap.d from lap.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_alloc.c -o GA_alloc.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_matrix.c -o GA_matrix.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_matrix_R.c -o GA_matrix_R.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_message.c -o GA_message.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_vector.c -o GA_vector.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.3-bioc/R/include     -O3 -Wall  -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.3-bioc/R/include  -i GraphAlignment_res.rc -o GraphAlignment_res.o
gcc  -std=gnu99  -shared -s  -o GraphAlignment.dll GraphAlignment.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o GraphAlignment_res.o  -Le:/biocbld/bbs-2.3-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package GraphAlignment for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GraphAlignment'
     Formats: text html latex example chm 
  AlignNetworks                     text    html    latex   example chm
  AlignedPairs                      text    html    latex   example chm
  AnalyzeAlignment                  text    html    latex   example chm
  ComputeLinkParameters             text    html    latex   example chm
  ComputeM                          text    html    latex   example chm
  ComputeNodeParameters             text    html    latex   example chm
  ComputeScores                     text    html    latex   example chm
  CreateScoreMatrix                 text    html    latex   example chm
  EncodeDirectedGraph               text    html    latex   example chm
  GenerateExample                   text    html    latex   example chm
  GetBinNumber                      text    html    latex   example chm
  InitialAlignment                  text    html    latex   example chm
  InvertPermutation                 text    html    latex   example chm
  LinearAssignment                  text    html    latex   example chm
  MatrixToBin                       text    html    latex   example chm
  Permute                           text    html    latex   example chm
  Trace                             text    html    latex   example chm
  VectorToBin                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.3-bioc\meat\GraphAlignment\chm\GraphAlignment.chm





Compile time: 0 minutes, 0 seconds

19	Topics

75	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.3-bioc\meat\GraphAlignment\chm\GraphAlignment.chm, 32,307 bytes

Compression decreased file by 26,297 bytes.

  adding MD5 sums

* DONE (GraphAlignment)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GraphAlignment_1.4.0.tar.gz'