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Package 49/294HostnameOS / ArchBUILDCHECKBUILD BIN
BSgenome 1.10.5
H. Pages
Bioconductor Changelog
Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/BSgenome
Last Changed Rev: 37897 / Revision: 38965
Last Changed Date: 2009-03-11 00:00:55 -0700 (Wed, 11 Mar 2009)
wilson2 Linux (openSUSE 11.1) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ OK ] OK 
Package: BSgenome
Version: 1.10.5
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes BSgenome_1.10.5.tar.gz
StartedAt: 2009-04-18 17:06:57 -0700 (Sat, 18 Apr 2009)
EndedAt: 2009-04-18 17:10:50 -0700 (Sat, 18 Apr 2009)
EllapsedTime: 232.6 seconds
RetCode: 0
Status: OK
CheckDir: BSgenome.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-bioc/meat/BSgenome.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'BSgenome/DESCRIPTION' ... OK
* this is package 'BSgenome' version '1.10.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BSgenome' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating BSgenome-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating BSgenome-manual.tex ... OK
* checking BSgenome-manual.tex using pdflatex ... OK

BSgenome.Rcheck/00install.out:

* Installing *source* package 'BSgenome' ...
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'


	The following object(s) are masked from package:base :

	 cbind,
	 rbind,
	 sapply 

Loading required package: Biostrings

Attaching package: 'Biostrings'


	The following object(s) are masked from package:base :

	 chartr,
	 order,
	 substr,
	 substring 

** help
 >>> Building/Updating help pages for package 'BSgenome'
     Formats: text html latex example 
  BSParams-class                    text    html    latex
  BSgenome-class                    text    html    latex   example
  BSgenomeForge                     text    html    latex   example
  available.genomes                 text    html    latex   example
  bsapply                           text    html    latex   example
  getSeq                            text    html    latex   example
  injectSNPs                        text    html    latex   example
** building package indices ...
* DONE (BSgenome)