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Package 8/233HostnameOS / ArchBUILDCHECKBUILD BIN
affycoretools 1.10.2
James W. MacDonald
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 28172 / Revision: 30966
Last Changed Date: 2007-10-23 12:32:04 -0700 (Tue, 23 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: affycoretools
Version: 1.10.2
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check affycoretools_1.10.2.tar.gz
StartedAt: 2008-04-09 16:36:56 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 16:40:49 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 232.8 seconds
RetCode: 0
Status: OK
CheckDir: affycoretools.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/affycoretools.Rcheck'
* using R version 2.6.2 (2008-02-08)
* checking for file 'affycoretools/DESCRIPTION' ... OK
* this is package 'affycoretools' version '1.10.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycoretools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affycoretools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affycoretools-manual.tex ... OK
* checking affycoretools-manual.tex ... OK


installing R.css in E:/biocbld/bbs-2.1-bioc/meat/affycoretools.Rcheck

---------- Making package affycoretools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example chm 
  affystart                         text    html    latex           chm
  annBM                             text    html    latex   example chm
  convert.back                      text    html    latex           chm
  extractStats                      text    html    latex           chm
  foldFilt                          text    html    latex           chm
  foldFiltBM                        text    html    latex           chm
  getCols                           text    html    latex           chm
  getIndex                          text    html    latex           chm
  getOrder                          text    html    latex           chm
  getSymbol                         text    html    latex           chm
  getUniqueLL                       text    html    latex           chm
  getans                            text    html    latex           chm
  houtSig                           text    html    latex           chm
  hyperG2annaffy                    text    html    latex           chm
  hyperGoutput                      text    html    latex           chm
  intNames                          text    html    latex           chm
  limma2annaffy                     text    html    latex           chm
  limma2biomaRt                     text    html    latex           chm                           text    html    latex           chm
  makeFCList                        text    html    latex           chm
  makeIndices                       text    html    latex           chm
  pca.legend                        text    html    latex           chm
  plotDeg                           text    html    latex   example chm
  plotMA                            text    html    latex           chm
  plotPCA                           text    html    latex           chm
  probes2table                      text    html    latex           chm
  probes2tableBM                    text    html    latex           chm
  tableFilt                         text    html    latex           chm
  vennCounts2                       text    html    latex   example chm
  vennSelect                        text    html    latex           chm
  vennSelectBM                      text    html    latex           chm
  vennSelectFC                      text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\affycoretools.Rcheck\00_pkg_src\affycoretools\chm\affycoretools.chm

Compile time: 0 minutes, 1 second
33	Topics
53	Local links
0	Internet links
1	Graphic

Created e:\biocbld\bbs-2.1-bioc\meat\affycoretools.Rcheck\00_pkg_src\affycoretools\chm\affycoretools.chm, 62,992 bytes
Compression decreased file by 80,652 bytes.
  preparing package affycoretools for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: biomaRt
Loading required package: RCurl

Attaching package: 'biomaRt'

	The following object(s) are masked from package:annotate :


Loading required package: gcrma
Loading required package: matchprobes
Loading required package: annaffy
Loading required package: GO

Attaching package: 'GO'

	The following object(s) are masked from package:GO.db :


Loading required package: KEGG

Attaching package: 'annaffy'

	The following object(s) are masked from package:RCurl :


  adding MD5 sums

* DONE (affycoretools)