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Package 8/233HostnameOS / ArchBUILDCHECKBUILD BIN
affycoretools 1.10.2
James W. MacDonald
Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008)
Last Changed Rev: 28172 / Revision: 30966
Last Changed Date: 2007-10-23 12:32:04 -0700 (Tue, 23 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64 [ OK ] OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
pitt Mac OS X Tiger (10.4.11) / i386  OK  OK  OK 
Package: affycoretools
Version: 1.10.2
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build affycoretools
StartedAt: 2008-04-09 14:46:54 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 14:48:03 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 68.5 seconds
RetCode: 0
Status: OK
PackageFile: affycoretools_1.10.2.tar.gz
PackageFileSize: 6.463 MiB

Command output

* checking for file 'affycoretools/DESCRIPTION' ... OK
* preparing 'affycoretools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'affycoretools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: GOstats
Loading required package: graph
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
Loading required package: RBGL
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: biomaRt
Loading required package: RCurl

Attaching package: 'biomaRt'

	The following object(s) are masked from package:annotate :


Loading required package: gcrma
Loading required package: matchprobes
Loading required package: annaffy
Loading required package: GO

Attaching package: 'GO'

	The following object(s) are masked from package:GO.db :


Loading required package: KEGG

Attaching package: 'annaffy'

	The following object(s) are masked from package:RCurl :


** help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example 
  affystart                         text    html    latex
  annBM                             text    html    latex   example
  convert.back                      text    html    latex
  extractStats                      text    html    latex
  foldFilt                          text    html    latex
  foldFiltBM                        text    html    latex
  getCols                           text    html    latex
  getIndex                          text    html    latex
  getOrder                          text    html    latex
  getSymbol                         text    html    latex
  getUniqueLL                       text    html    latex
  getans                            text    html    latex
  houtSig                           text    html    latex
  hyperG2annaffy                    text    html    latex
  hyperGoutput                      text    html    latex
  intNames                          text    html    latex
  limma2annaffy                     text    html    latex
  limma2biomaRt                     text    html    latex                           text    html    latex
  makeFCList                        text    html    latex
  makeIndices                       text    html    latex
  pca.legend                        text    html    latex
  plotDeg                           text    html    latex   example
  plotMA                            text    html    latex
  plotPCA                           text    html    latex
  probes2table                      text    html    latex
  probes2tableBM                    text    html    latex
  tableFilt                         text    html    latex
  vennCounts2                       text    html    latex   example
  vennSelect                        text    html    latex
  vennSelectBM                      text    html    latex
  vennSelectFC                      text    html    latex
** building package indices ...
* DONE (affycoretools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'affycoretools_1.10.2.tar.gz'