NxtIRFdata
Data for NxtIRF
Bioconductor version: Release (3.19)
NxtIRFdata is a companion package for SpliceWiz, an interactive analysis and visualization tool for alternative splicing quantitation (including intron retention) for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.
Author: Alex Chit Hei Wong [aut, cre, cph], Ulf Schmitz [ctb]
Maintainer: Alex Chit Hei Wong <a.wong at centenary.org.au>
citation("NxtIRFdata")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NxtIRFdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NxtIRFdata")
NxtIRFdata: a data package for NxtIRF | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | ExperimentData, ExperimentHub, ExpressionData, Genome, PackageTypeData, RNASeqData |
Version | 1.10.0 |
License | MIT + file LICENSE |
Depends | |
Imports | ExperimentHub, BiocFileCache, rtracklayer, R.utils |
System Requirements | |
URL | https://github.com/alexchwong/NxtIRFdata |
Bug Reports | https://support.bioconductor.org/ |
See More
Suggests | testthat (>= 3.0.0), knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | SpliceWiz |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | NxtIRFdata_1.10.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/NxtIRFdata |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NxtIRFdata |
Package Short Url | https://bioconductor.org/packages/NxtIRFdata/ |
Package Downloads Report | Download Stats |