Welcome to the new bioconductor.org!

BiocFileCache

Manage Files Across Sessions


Bioconductor version: Release (3.18)

This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.

Author: Lori Shepherd [aut, cre], Martin Morgan [aut]

Maintainer: Lori Shepherd <lori.shepherd at roswellpark.org>

Citation (from within R, enter citation("BiocFileCache")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocFileCache")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocFileCache")
BiocFileCache: Managing File Resources Across Sessions HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, Software
Version 2.10.1
In Bioconductor since BioC 3.5 (R-3.4) (7 years)
License Artistic-2.0
Depends R (>= 3.4.0), dbplyr (>= 1.0.0)
Imports methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl, httr
System Requirements
URL
Bug Reports https://github.com/Bioconductor/BiocFileCache/issues
See More
Suggests testthat, knitr, BiocStyle, rmarkdown, rtracklayer
Linking To
Enhances
Depends On Me AnnotationHub, easylift, ExperimentHub, JASPAR2022, JASPAR2024, RcwlPipelines, scATAC.Explorer, TMExplorer
Imports Me AMARETTO, atSNP, autonomics, BayesSpace, BiocCheck, BiocHail, BiocPkgTools, biodb, biomaRt, BioPlex, brendaDb, bugsigdbr, cbaf, cBioPortalData, CBNplot, CellBench, CTDquerier, customCMPdb, CytoPipeline, DNAZooData, drugTargetInteractions, easyRNASeq, enhancerHomologSearch, EnMCB, EnrichmentBrowser, EpiTxDb, fenr, fgga, fourDNData, geneplast.data, GenomicScores, GenomicSuperSignature, ggkegg, GSEABenchmarkeR, gwascat, hca, HiContactsData, HPO.db, iSEEindex, MBQN, MetaScope, MicrobiomeBenchmarkData, MPO.db, netDx, NxtIRFdata, ontoProc, org.Mxanthus.db, Organism.dplyr, orthosData, PANTHER.db, PhIPData, psichomics, recount3, recountmethylation, regutools, ReUseData, RiboDiPA, rpx, scviR, sesame, SFEData, signeR, SingleCellMultiModal, SingscoreAMLMutations, SpatialExperiment, spatialLIBD, SpatialOmicsOverlay, SpliceWiz, terraTCGAdata, TFutils, tomoseqr, tximeta, UMI4Cats, uncoverappLib, UniProt.ws, waddR
Suggests Me AnnotationForge, bambu, BiocOncoTK, BiocSet, chipseqDB, emtdata, EpiCompare, fastreeR, FLAMES, fluentGenomics, GRaNIE, HiCDCPlus, HiCExperiment, HiCool, HighlyReplicatedRNASeq, HumanTranscriptomeCompendium, MethReg, MethylSeqData, msigdb, Nebulosa, progeny, qsvaR, scRNAseq, seqsetvis, simpleSingleCell, spatialHeatmap, structToolbox, TENxBrainData, TENxPBMCData, TREG, zellkonverter
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BiocFileCache_2.10.1.tar.gz
Windows Binary BiocFileCache_2.10.1.zip
macOS Binary (x86_64) BiocFileCache_2.10.1.tgz
macOS Binary (arm64) BiocFileCache_2.10.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/BiocFileCache
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BiocFileCache
Bioc Package Browser https://code.bioconductor.org/browse/BiocFileCache/
Package Short Url https://bioconductor.org/packages/BiocFileCache/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive