psygenet2r

DOI: 10.18129/B9.bioc.psygenet2r    

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Bioconductor version: Release (3.14)

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <a.gutierrez.sacristan at gmail.com>

Citation (from within R, enter citation("psygenet2r")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("psygenet2r")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("psygenet2r")

 

HTML R Script psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders
HTML R Script psygenet2r: Case study on GWAS on bipolar disorder
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software
Version 1.26.0
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, Biobase, labeling, GO.db
LinkingTo
Suggests testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package psygenet2r_1.26.0.tar.gz
Windows Binary psygenet2r_1.26.0.zip
macOS 10.13 (High Sierra) psygenet2r_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/psygenet2r
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/psygenet2r
Package Short Url https://bioconductor.org/packages/psygenet2r/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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