spatialDmelxsim

DOI: 10.18129/B9.bioc.spatialDmelxsim  

This is the development version of spatialDmelxsim; for the stable release version, see spatialDmelxsim.

Spatial allelic expression counts for fly cross embryo

Bioconductor version: Development (3.18)

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData
Version	1.7.0
License	GPL-3
Depends	R (>= 4.1), ExperimentHub, SummarizedExperiment
Imports	utils
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/mikelove/spatialDmelxsim
BugReports	https://github.com/mikelove/spatialDmelxsim/issues
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Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/spatialDmelxsim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/spatialDmelxsim
Package Short Url	https://bioconductor.org/packages/spatialDmelxsim/
Package Downloads Report	Download Stats