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muscData

This is the development version of muscData; for the stable release version, see muscData.

Multi-sample multi-group scRNA-seq data


Bioconductor version: Development (3.19)

Data package containing a collection of multi-sample multi-group scRNA-seq datasets in SingleCellExperiment Bioconductor object format.

Author: Helena L. Crowell [aut, cre]

Maintainer: Helena L. Crowell <helena.crowell at uzh.ch>

Citation (from within R, enter citation("muscData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("muscData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("muscData")
Multi-sample multi-group scRNA-seq data HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, ImmunoOncologyData, SingleCellData
Version 1.17.0
License MIT + file LICENSE
Depends R (>= 3.6), ExperimentHub, SingleCellExperiment
Imports utils
System Requirements
URL https://github.com/HelenaLC/muscData
Bug Reports https://github.com/HelenaLC/muscData/issues
See More
Suggests BiocStyle, dplyr, DropletUtils, knitr, GEOquery, Matrix, matrixStats, methods, muscat, rmarkdown, R.utils, readxl, scater, scds, Seurat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package muscData_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/muscData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/muscData
Package Short Url https://bioconductor.org/packages/muscData/
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