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DeSousa2013

This is the development version of DeSousa2013; for the stable release version, see DeSousa2013.

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion


Bioconductor version: Development (3.19)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Citation (from within R, enter citation("DeSousa2013")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DeSousa2013")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")
Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions PDF R Script
Reference Manual PDF

Details

biocViews CancerData, ColonCancerData, ExperimentData, MicroarrayData
Version 1.39.0
License Artistic-2.0
Depends R (>= 2.15)
Imports affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DeSousa2013_1.39.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/DeSousa2013
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DeSousa2013
Package Short Url https://bioconductor.org/packages/DeSousa2013/
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