DAPARdata

DOI: 10.18129/B9.bioc.DAPARdata    

This is the development version of DAPARdata; for the stable release version, see DAPARdata.

Data accompanying the DAPAR and Prostar packages

Bioconductor version: Development (3.14)

Mass-spectrometry based UPS proteomics data sets from Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods. Data Brief. 2015 Dec 17;6:286-94 and Giai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute, Y., Burger, T. (2016). Calibration plot for proteomics: A graphical tool to visually check the assumptions underlying FDR control in quantitative experiments. Proteomics, 16(1), 29-32.

Author: Samuel Wieczorek and Florence Combes

Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>

Citation (from within R, enter citation("DAPARdata")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("DAPARdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DAPARdata")

 

PDF Exp1_R25_pept.pdf
PDF Exp1_R25_prot.pdf
PDF Exp1_R2_pept.pdf
PDF Exp1_R2_prot.pdf
PDF Exp2_R100_pept.pdf
PDF Exp2_R100_prot.pdf
PDF Exp2_R10_pept.pdf
PDF Exp2_R10_prot.pdf
PDF Exp2_R2_pept.pdf
PDF Exp2_R2_prot.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews ExperimentData, MassSpectrometryData
Version 1.23.1
License GPL-2
Depends R (>= 4.1.0)
Imports utils, knitr, MSnbase
LinkingTo
Suggests DAPAR(>= 1.25.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me DAPAR, Prostar
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DAPARdata_1.23.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/DAPARdata
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DAPARdata
Package Short Url https://bioconductor.org/packages/DAPARdata/
Package Downloads Report Download Stats

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