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CLLmethylation

This is the development version of CLLmethylation; for the stable release version, see CLLmethylation.

Methylation data of primary CLL samples in PACE project


Bioconductor version: Development (3.19)

The package includes DNA methylation data for the primary Chronic Lymphocytic Leukemia samples included in the Primary Blood Cancer Encyclopedia (PACE) project. Raw data from the 450k DNA methylation arrays is stored in the European Genome-Phenome Archive (EGA) under accession number EGAS0000100174. For more information concerning the project please refer to the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) and R/Bioconductor package BloodCancerMultiOmics2017.

Author: Malgorzata Oles, Andreas Mock

Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>, Andreas Mock <andreas.mock at embl.de>

Citation (from within R, enter citation("CLLmethylation")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CLLmethylation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CLLmethylation")
CLLmethylation HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews CancerData, DiseaseModel, ExperimentData, LeukemiaCancerData
Version 1.23.0
License LGPL
Depends R (>= 3.5.0)
Imports SummarizedExperiment, ExperimentHub
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Suggests BiocStyle, ggplot2, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CLLmethylation_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/CLLmethylation
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CLLmethylation
Package Short Url https://bioconductor.org/packages/CLLmethylation/
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