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TxDb.Hsapiens.UCSC.hg38.knownGene

This is the development version of TxDb.Hsapiens.UCSC.hg38.knownGene; for the stable release version, see TxDb.Hsapiens.UCSC.hg38.knownGene.

Annotation package for TxDb object(s)


Bioconductor version: Development (3.19)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg38.knownGene")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, Homo_sapiens, TxDb
Version 3.18.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.53.2)
Imports AnnotationDbi
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me annotation
Imports Me DNAfusion, epimutacions, musicatk, nearBynding, OutSplice, profileplyr, rCGH, rGREAT, signifinder, strandCheckR, uncoverappLib
Suggests Me annotatr, bambu, BSgenome, BUSpaRse, chipenrich.data, ChIPpeakAnno, DegCre, enhancerHomologSearch, EpiCompare, EpiTxDb, gDNAx, geneAttribution, GenomicDataCommons, GenomicFeatures, GenomicScores, GenVisR, GRaNIE, hicVennDiagram, ideal, NanoMethViz, NoRCE, Organism.dplyr, podkat, raer, SARC, scmeth, SOMNiBUS, spatzie, Ularcirc, wiggleplotr, xcoredata
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TxDb.Hsapiens.UCSC.hg38.knownGene_3.18.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/
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