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This is the development version of BSgenome.Mmusculus.UCSC.mm9; for the stable release version, see BSgenome.Mmusculus.UCSC.mm9.

Full genome sequences for Mus musculus (UCSC version mm9)

Bioconductor version: Development (3.20)

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("BSgenome.Mmusculus.UCSC.mm9")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews AnnotationData, BSgenome, Genetics, Mus_musculus
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
System Requirements
See More
Suggests TxDb.Mmusculus.UCSC.mm9.knownGene
Linking To
Depends On Me BSgenome.Mmusculus.UCSC.mm9.masked
Imports Me musicatk, SPLINTER, BSgenome.Mmusculus.UCSC.mm9.masked
Suggests Me chipseq, circRNAprofiler, compEpiTools, GRaNIE, HiCDCPlus, MEDME, methrix, MMDiff2, CAGEWorkflow
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Mmusculus.UCSC.mm9_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
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