DOI: 10.18129/B9.bioc.velociraptor    

This is the development version of velociraptor; for the stable release version, see velociraptor.

Toolkit for Single-Cell Velocity

Bioconductor version: Development (3.17)

This package provides Bioconductor-friendly wrappers for RNA velocity calculations in single-cell RNA-seq data. We use the basilisk package to manage Conda environments, and the zellkonverter package to convert data structures between SingleCellExperiment (R) and AnnData (Python). The information produced by the velocity methods is stored in the various components of the SingleCellExperiment class.

Author: Kevin Rue-Albrecht [aut, cre] , Aaron Lun [aut] , Charlotte Soneson [aut] , Michael Stadler [aut]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at>

Citation (from within R, enter citation("velociraptor")):


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# The following initializes usage of Bioc devel


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biocViews Coverage, GeneExpression, Sequencing, SingleCell, Software
Version 1.9.0
In Bioconductor since BioC 3.12 (R-4.0) (2 years)
License MIT + file LICENSE
Depends SummarizedExperiment
Imports methods, stats, Matrix, BiocGenerics, reticulate, S4Vectors, DelayedArray, basilisk, zellkonverter, scuttle, SingleCellExperiment, BiocParallel, BiocSingular
Suggests BiocStyle, testthat, knitr, rmarkdown, pkgdown, scran, scater, scRNAseq, Rtsne, graphics, grDevices, ggplot2, cowplot, GGally, patchwork, metR
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