DOI: 10.18129/B9.bioc.tidySummarizedExperiment  

This is the development version of tidySummarizedExperiment; for the stable release version, see tidySummarizedExperiment.

Brings SummarizedExperiment to the Tidyverse

Bioconductor version: Development (3.18)

tidySummarizedExperiment is an adapter that abstracts the 'SummarizedExperiment' container in the form of tibble and allows the data manipulation, plotting and nesting using 'tidyverse'

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidySummarizedExperiment")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Overview of the tidySummarizedExperiment package
PDF   Reference Manual


biocViews AssayDomain, Clustering, DifferentialExpression, GeneExpression, Infrastructure, Normalization, QualityControl, RNASeq, Sequencing, Software, Transcription, Transcriptomics
Version 1.11.0
In Bioconductor since BioC 3.12 (R-4.0) (2.5 years)
License GPL-3
Depends R (>= 4.1.0), SummarizedExperiment
Imports tibble (>= 3.0.4), dplyr, magrittr, tidyr, ggplot2, rlang, purrr, lifecycle, methods, plotly, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi
Suggests BiocStyle, testthat, knitr, markdown
URL https://github.com/stemangiola/tidySummarizedExperiment
BugReports https://github.com/stemangiola/tidySummarizedExperiment/issues
Depends On Me
Imports Me
Suggests Me nullranges, tidybulk
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidySummarizedExperiment_1.11.0.tar.gz
Windows Binary tidySummarizedExperiment_1.11.0.zip
macOS Binary (x86_64) tidySummarizedExperiment_1.11.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tidySummarizedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidySummarizedExperiment
Bioc Package Browser https://code.bioconductor.org/browse/tidySummarizedExperiment/
Package Short Url https://bioconductor.org/packages/tidySummarizedExperiment/
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