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switchde

This is the development version of switchde; for the stable release version, see switchde.

Switch-like differential expression across single-cell trajectories


Bioconductor version: Development (3.20)

Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.

Author: Kieran Campbell [aut, cre]

Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>

Citation (from within R, enter citation("switchde")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("switchde")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchde")
An overview of the switchde package HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.31.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.4), SingleCellExperiment
Imports SummarizedExperiment, dplyr, ggplot2, methods, stats
System Requirements
URL https://github.com/kieranrcampbell/switchde
Bug Reports https://github.com/kieranrcampbell/switchde
See More
Suggests knitr, rmarkdown, BiocStyle, testthat, numDeriv, tidyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package switchde_1.31.0.tar.gz
Windows Binary switchde_1.31.0.zip
macOS Binary (x86_64) switchde_1.31.0.tgz
macOS Binary (arm64) switchde_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/switchde
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/switchde
Bioc Package Browser https://code.bioconductor.org/browse/switchde/
Package Short Url https://bioconductor.org/packages/switchde/
Package Downloads Report Download Stats