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statTarget

This is the development version of statTarget; for the stable release version, see statTarget.

Statistical Analysis of Molecular Profiles


Bioconductor version: Development (3.19)

A streamlined tool provides a graphical user interface for quality control based signal drift correction (QC-RFSC), integration of data from multi-batch MS-based experiments, and the comprehensive statistical analysis in metabolomics and proteomics.

Author: Hemi Luan

Maintainer: Hemi Luan <hemi.luan at gmail.com>

Citation (from within R, enter citation("statTarget")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("statTarget")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("statTarget")
QC_free approach with Combat method HTML R Script
statTarget2 for pathway analysis HTML R Script
statTarget2 On using the Graphical User Interface HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BatchEffect, ComBat, DifferentialExpression, ImmunoOncology, Lipidomics, Machine Learning, MassSpectrometry, Metabolomics, MultipleComparison, Normalization, Preprocessing, Proteomics, QC-RFSC, QualityControl, Software, Visualization
Version 1.33.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License LGPL (>= 3)
Depends R (>= 3.6.0)
Imports randomForest, plyr, pdist, ROC, utils, grDevices, graphics, rrcov, stats, pls, impute
System Requirements
URL https://stattarget.github.io
See More
Suggests testthat, BiocStyle, knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package statTarget_1.33.0.tar.gz
Windows Binary statTarget_1.33.0.zip
macOS Binary (x86_64) statTarget_1.33.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/statTarget
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/statTarget
Bioc Package Browser https://code.bioconductor.org/browse/statTarget/
Package Short Url https://bioconductor.org/packages/statTarget/
Package Downloads Report Download Stats