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This is the development version of splatter; for the stable release version, see splatter.
Bioconductor version: Development (3.17)
Splatter is a package for the simulation of single-cell RNA sequencing count data. It provides a simple interface for creating complex simulations that are reproducible and well-documented. Parameters can be estimated from real data and functions are provided for comparing real and simulated datasets.
Author: Luke Zappia [aut, cre] , Belinda Phipson [aut]
, Christina Azodi [ctb]
, Alicia Oshlack [aut]
Maintainer: Luke Zappia <luke at lazappi.id.au>
Citation (from within R,
enter citation("splatter")
):
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("splatter")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("splatter")
HTML | R Script | An introduction to the Splatter package |
HTML | R Script | Splat simulation parameters |
HTML | R Script | splatPop simulation |
Reference Manual |
Follow Installation instructions to use this package in your R session.
Source Package | splatter_1.23.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/splatter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/splatter |
Package Short Url | https://bioconductor.org/packages/splatter/ |
Package Downloads Report | Download Stats |
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