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This is the development version of rpx; for the stable release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: Development (3.19)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at>

Citation (from within R, enter citation("rpx")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

An R interface to the ProteomeXchange repository HTML R Script
Reference Manual PDF


biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 2.11.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 3.5.0), methods
Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils
System Requirements
Bug Reports
See More
Suggests Biostrings, BiocStyle, testthat, knitr, tibble, rmarkdown
Linking To
Depends On Me
Imports Me
Suggests Me MsExperiment, MSnbase, PSMatch, RforProteomics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_2.11.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) rpx_2.11.0.tgz
macOS Binary (arm64) rpx_2.11.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats