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rTRMui

This is the development version of rTRMui; for the stable release version, see rTRMui.

A shiny user interface for rTRM


Bioconductor version: Development (3.19)

This package provides a web interface to compute transcriptional regulatory modules with rTRM.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRMui")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rTRMui")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRMui")
Introduction to rTRMui PDF R Script
Reference Manual PDF

Details

biocViews GUI, GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.41.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends
Imports shiny (>= 0.9), rTRM, MotifDb, org.Hs.eg.db, org.Mm.eg.db
System Requirements
URL https://github.com/ddiez/rTRMui
Bug Reports https://github.com/ddiez/rTRMui/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rTRMui_1.41.0.tar.gz
Windows Binary
macOS Binary (x86_64) rTRMui_1.41.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/rTRMui
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rTRMui
Bioc Package Browser https://code.bioconductor.org/browse/rTRMui/
Package Short Url https://bioconductor.org/packages/rTRMui/
Package Downloads Report Download Stats