qPLEXanalyzer

DOI: 10.18129/B9.bioc.qPLEXanalyzer  

This is the development version of qPLEXanalyzer; for the stable release version, see qPLEXanalyzer.

Tools for quantitative proteomics data analysis

Bioconductor version: Development (3.18)

Tools for TMT based quantitative proteomics data analysis.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("qPLEXanalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version	1.19.0
In Bioconductor since	BioC 3.8 (R-3.5) (4.5 years)
License	GPL-2
Depends	R (>= 4.0), Biobase, MSnbase
Imports	assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils
LinkingTo
Suggests	gridExtra, knitr, qPLEXdata, rmarkdown, statmod, testthat, UniProt.ws, vdiffr
SystemRequirements
Enhances
URL
BugReports	https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me	qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	qPLEXanalyzer_1.19.0.zip (64-bit only)
macOS Binary (x86_64)	qPLEXanalyzer_1.19.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Bioc Package Browser	https://code.bioconductor.org/browse/qPLEXanalyzer/
Package Short Url	https://bioconductor.org/packages/qPLEXanalyzer/
Package Downloads Report	Download Stats