DOI: 10.18129/B9.bioc.omicRexposome  

This is the development version of omicRexposome; for the stable release version, see omicRexposome.

Exposome and omic data associatin and integration analysis

Bioconductor version: Development (3.18)

omicRexposome systematizes the association evaluation between exposures and omic data, taking advantage of MultiDataSet for coordinated data management, rexposome for exposome data definition and limma for association testing. Also to perform data integration mixing exposome and omic data using multi co-inherent analysis (omicade4) and multi-canonical correlation analysis (PMA).

Author: Carles Hernandez-Ferrer [aut, cre], Juan R. González [aut]

Maintainer: Xavier EscribĂ  Montagut <xavier.escriba at>

Citation (from within R, enter citation("omicRexposome")):


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biocViews DifferentialExpression, DifferentialMethylation, Epigenetics, GeneExpression, GeneRegulation, ImmunoOncology, MultipleComparison, Proteomics, Regression, Software, StatisticalMethod, Transcriptomics, Visualization, WorkflowStep
Version 1.23.0
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), Biobase
Imports stats, utils, grDevices, graphics, methods, rexposome, limma, sva, ggplot2, ggrepel, PMA, omicade4, gridExtra, MultiDataSet, SmartSVA, isva, parallel, SummarizedExperiment, stringr
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