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ncGTW

This is the development version of ncGTW; for the stable release version, see ncGTW.

Alignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection


Bioconductor version: Development (3.19)

The purpose of ncGTW is to help XCMS for LC-MS data alignment. Currently, ncGTW can detect the misaligned feature groups by XCMS, and the user can choose to realign these feature groups by ncGTW or not.

Author: Chiung-Ting Wu <ctwu at vt.edu>

Maintainer: Chiung-Ting Wu <ctwu at vt.edu>

Citation (from within R, enter citation("ncGTW")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ncGTW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Alignment, MassSpectrometry, Metabolomics, Software
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-2
Depends methods, BiocParallel, xcms
Imports Rcpp, grDevices, graphics, stats
System Requirements
URL
Bug Reports https://github.com/ChiungTingWu/ncGTW/issues
See More
Suggests BiocStyle, knitr, testthat, rmarkdown
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/ncGTW
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncGTW
Package Short Url https://bioconductor.org/packages/ncGTW/
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