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This is the development version of multiGSEA; for the stable release version, see multiGSEA.

Combining GSEA-based pathway enrichment with multi omics data integration

Bioconductor version: Development (3.19)

Extracted features from pathways derived from 8 different databases (KEGG, Reactome, Biocarta, etc.) can be used on transcriptomic, proteomic, and/or metabolomic level to calculate a combined GSEA-based enrichment score.

Author: Sebastian Canzler [aut, cre] , J├Ârg Hackerm├╝ller [aut]

Maintainer: Sebastian Canzler <sebastian.canzler at ufz.de>

Citation (from within R, enter citation("multiGSEA")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

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Reference Manual PDF


biocViews BioCarta, GeneSetEnrichment, Pathways, Reactome, Software
Version 1.13.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports magrittr, graphite, AnnotationDbi, metaboliteIDmapping, dplyr, fgsea, metap, rappdirs, rlang, methods
System Requirements
URL https://github.com/yigbt/multiGSEA
Bug Reports https://github.com/yigbt/multiGSEA/issues
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Suggests org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, org.Ss.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Dm.eg.db, org.Dr.eg.db, org.Gg.eg.db, org.Xl.eg.db, org.Cf.eg.db, knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0)
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Follow Installation instructions to use this package in your R session.

Source Package multiGSEA_1.13.0.tar.gz
Windows Binary multiGSEA_1.13.0.zip
macOS Binary (x86_64) multiGSEA_1.13.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/multiGSEA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiGSEA
Bioc Package Browser https://code.bioconductor.org/browse/multiGSEA/
Package Short Url https://bioconductor.org/packages/multiGSEA/
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