miRBaseConverter

DOI: 10.18129/B9.bioc.miRBaseConverter    

This is the development version of miRBaseConverter; for the stable release version, see miRBaseConverter.

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: Development (3.17)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")

 

HTML	R Script	miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
PDF		Reference Manual

Details

biocViews	Software, miRNA
Version	1.23.0
In Bioconductor since	BioC 3.6 (R-3.4) (5 years)
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	stats
LinkingTo
Suggests	BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/taoshengxu/miRBaseConverter
BugReports	https://github.com/taoshengxu/miRBaseConverter/issues
Depends On Me
Imports Me	ExpHunterSuite, SPONGE
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRBaseConverter_1.23.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url	https://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report	Download Stats