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This is the development version of made4; for the stable release version, see made4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: Development (3.20)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at>

Citation (from within R, enter citation("made4")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Authoring R Markdown vignettes HTML R Script
Reference Manual PDF


biocViews Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version 1.79.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License Artistic-2.0
Depends RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports ade4
System Requirements
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Suggests affy, BiocStyle, knitr, rmarkdown
Linking To
Depends On Me
Imports Me omicade4
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package made4_1.79.0.tar.gz
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macOS Binary (x86_64) made4_1.79.0.tgz
macOS Binary (arm64) made4_1.79.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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