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ggtreeExtra

This is the development version of ggtreeExtra; for the stable release version, see ggtreeExtra.

An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"


Bioconductor version: Development (3.19)

'ggtreeExtra' extends the method for mapping and visualizing associated data on phylogenetic tree using 'ggtree'. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by 'ggtree' with the grammar of 'ggplot2'.

Author: Shuangbin Xu [aut, cre] , Guangchuang Yu [aut, ctb]

Maintainer: Shuangbin Xu <xshuangbin at 163.com>

Citation (from within R, enter citation("ggtreeExtra")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ggtreeExtra")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtreeExtra")
ggtreeExtra HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Phylogenetics, Software, Visualization
Version 1.13.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL (>= 3)
Depends
Imports ggplot2, utils, rlang, ggnewscale, stats, ggtree, tidytree (>= 0.3.9), cli, magrittr
System Requirements
URL https://github.com/YuLab-SMU/ggtreeExtra/
Bug Reports https://github.com/YuLab-SMU/ggtreeExtra/issues
See More
Suggests treeio, ggstar, patchwork, knitr, rmarkdown, prettydoc, markdown, testthat (>= 3.0.0), pillar
Linking To
Enhances
Depends On Me
Imports Me MicrobiotaProcess
Suggests Me enrichplot, ggmsa
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ggtreeExtra_1.13.0.tar.gz
Windows Binary ggtreeExtra_1.13.0.zip (64-bit only)
macOS Binary (x86_64) ggtreeExtra_1.13.0.tgz
macOS Binary (arm64) ggtreeExtra_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ggtreeExtra
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ggtreeExtra
Bioc Package Browser https://code.bioconductor.org/browse/ggtreeExtra/
Package Short Url https://bioconductor.org/packages/ggtreeExtra/
Package Downloads Report Download Stats