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flowVS

This is the development version of flowVS; for the stable release version, see flowVS.

Variance stabilization in flow cytometry (and microarrays)


Bioconductor version: Development (3.19)

Per-channel variance stabilization from a collection of flow cytometry samples by Bertlett test for homogeneity of variances. The approach is applicable to microarrays data as well.

Author: Ariful Azad

Maintainer: Ariful Azad <azad at iu.edu>

Citation (from within R, enter citation("flowVS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowVS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowVS")
flowVS: Cell population matching and meta-clustering in Flow Cytometry PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Microarray, Software
Version 1.35.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 3.2), methods, flowCore, flowViz, flowStats
Imports
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Suggests knitr, vsn
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowVS_1.35.0.tar.gz
Windows Binary flowVS_1.35.0.zip
macOS Binary (x86_64) flowVS_1.35.0.tgz
macOS Binary (arm64) flowVS_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowVS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowVS
Bioc Package Browser https://code.bioconductor.org/browse/flowVS/
Package Short Url https://bioconductor.org/packages/flowVS/
Package Downloads Report Download Stats