cliProfiler

DOI: 10.18129/B9.bioc.cliProfiler    

This is the development version of cliProfiler; for the stable release version, see cliProfiler.

A package for the CLIP data visualization

Bioconductor version: Development (3.15)

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Citation (from within R, enter citation("cliProfiler")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("cliProfiler")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cliProfiler")

 

HTML R Script cliProfiler Vignettes
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Epigenetics, Genetics, Sequencing, Software, Visualization
Version 1.1.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License Artistic-2.0
Depends S4Vectors, methods, R (>= 4.1)
Imports dplyr, rtracklayer, GenomicRanges, ggplot2, BSgenome, Biostrings, utils
LinkingTo
Suggests knitr, rmarkdown, bookdown, testthat, BiocStyle
SystemRequirements
Enhances
URL https://github.com/Codezy99/cliProfiler
BugReports https://github.com/Codezy99/cliProfiler/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cliProfiler_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) cliProfiler_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cliProfiler
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cliProfiler
Package Short Url https://bioconductor.org/packages/cliProfiler/
Package Downloads Report Download Stats

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