Welcome to the new bioconductor.org!


This is the development version of biocGraph; for the stable release version, see biocGraph.

Graph examples and use cases in Bioinformatics

Bioconductor version: Development (3.19)

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Citation (from within R, enter citation("biocGraph")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Examples of plotting graphs Using Rgraphviz PDF R Script
HOWTO layout pathways PDF R Script
Reference Manual PDF


biocViews GraphAndNetwork, Software, Visualization
Version 1.65.0
In Bioconductor since BioC 2.1 (R-2.6) (16.5 years)
License Artistic-2.0
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, BiocGenerics, methods
System Requirements
See More
Suggests fibroEset, geneplotter, hgu95av2.db
Linking To
Depends On Me
Imports Me
Suggests Me EnrichmentBrowser
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biocGraph_1.65.0.tar.gz
Windows Binary biocGraph_1.65.0.zip
macOS Binary (x86_64) biocGraph_1.65.0.tgz
macOS Binary (arm64) biocGraph_1.65.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biocGraph
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biocGraph
Bioc Package Browser https://code.bioconductor.org/browse/biocGraph/
Package Short Url https://bioconductor.org/packages/biocGraph/
Package Downloads Report Download Stats