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This is the development version of apComplex; for the stable release version, see apComplex.

Estimate protein complex membership using AP-MS protein data

Bioconductor version: Development (3.19)

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Citation (from within R, enter citation("apComplex")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

apComplex PDF R Script
Reference Manual PDF


biocViews GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version 2.69.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 2.10), graph, RBGL
Imports Rgraphviz, stats, org.Sc.sgd.db
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Follow Installation instructions to use this package in your R session.

Source Package apComplex_2.69.0.tar.gz
Windows Binary apComplex_2.69.0.zip
macOS Binary (x86_64) apComplex_2.69.0.tgz
macOS Binary (arm64) apComplex_2.69.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apComplex
Bioc Package Browser https://code.bioconductor.org/browse/apComplex/
Package Short Url https://bioconductor.org/packages/apComplex/
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