VaSP

DOI: 10.18129/B9.bioc.VaSP    

This is the development version of VaSP; for the stable release version, see VaSP.

Quantification and Visualization of Variations of Splicing in Population

Bioconductor version: Development (3.15)

Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population.

Author: Huihui Yu [aut, cre] , Qian Du [aut] , Chi Zhang [aut]

Maintainer: Huihui Yu <yuhuihui2011 at foxmail.com>

Citation (from within R, enter citation("VaSP")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("VaSP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization
Version 1.7.1
In Bioconductor since BioC 3.12 (R-4.0) (1 year)
License GPL (>= 2.0)
Depends R (>= 4.0), ballgown
Imports IRanges, GenomicRanges, S4Vectors, Sushi, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/yuhuihui2011/VaSP
BugReports https://github.com/yuhuihui2011/VaSP/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/VaSP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/VaSP
Package Short Url https://bioconductor.org/packages/VaSP/
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