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This is the development version of SEtools; for the stable release version, see SEtools.

SEtools: tools for working with SummarizedExperiment

Bioconductor version: Development (3.20)

This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at>

Citation (from within R, enter citation("SEtools")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

SEtools HTML R Script
Reference Manual PDF


biocViews GeneExpression, Software
Version 1.19.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL
Depends R (>= 4.0), SummarizedExperiment, sechm
Imports BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva
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Suggests BiocStyle, knitr, rmarkdown, ggplot2
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Follow Installation instructions to use this package in your R session.

Source Package SEtools_1.19.0.tar.gz
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macOS Binary (x86_64) SEtools_1.19.0.tgz
macOS Binary (arm64) SEtools_1.19.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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