Rbwa
This is the development version of Rbwa; for the stable release version, see Rbwa.
R wrapper for BWA-backtrack and BWA-MEM aligners
Bioconductor version: Development (3.20)
Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.
Author: Jean-Philippe Fortin [aut, cre]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
citation("Rbwa")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rbwa")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rbwa")
An introduction to Rbwa | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Alignment, Sequencing, Software |
Version | 1.9.0 |
In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 4.1) |
Imports | |
System Requirements | GNU make |
URL | https://github.com/Jfortin1/Rbwa |
Bug Reports | https://github.com/crisprVerse/Rbwa/issues |
See More
Suggests | testthat, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | crisprBwa |
Suggests Me | crisprDesign |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Rbwa_1.9.0.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | Rbwa_1.9.0.tgz |
macOS Binary (arm64) | Rbwa_1.9.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rbwa |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rbwa |
Bioc Package Browser | https://code.bioconductor.org/browse/Rbwa/ |
Package Short Url | https://bioconductor.org/packages/Rbwa/ |
Package Downloads Report | Download Stats |