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RNAmodR.ML

This is the development version of RNAmodR.ML; for the stable release version, see RNAmodR.ML.

Detecting patterns of post-transcriptional modifications using machine learning


Bioconductor version: Development (3.19)

RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.ML")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAmodR.ML")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.ML")
RNAmodR.ML HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Infrastructure, Sequencing, Software, Visualization, WorkflowStep
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6), RNAmodR
Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, stats, ranger
System Requirements
URL https://github.com/FelixErnst/RNAmodR.ML
Bug Reports https://github.com/FelixErnst/RNAmodR.ML/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data, RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer, keras
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.ML_1.17.0.tar.gz
Windows Binary RNAmodR.ML_1.17.0.zip
macOS Binary (x86_64) RNAmodR.ML_1.17.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.ML
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.ML
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.ML/
Package Short Url https://bioconductor.org/packages/RNAmodR.ML/
Package Downloads Report Download Stats